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1

Network Science of Biological Systems at Different Scales: A Review

Gosak, Marko, Markovič, Rene, Dolenšek, Jurij, Slak Rupnik, Marjan, Marhl, Marko, Stožer, Andraž, Perc, Matjaž

Journal:

Physics of Life Reviews

Year:

2017

Language:

english

File:

PDF, 4.69 MB

english, 2017

2

Modelling of Energy-Driven Switch for Glucagon and Insulin Secretion

Grubelnik, Vladimir, Zmazek, Jan, MarkoviÄ, Rene, Gosak, Marko, Marhl, Marko

Journal:

Journal of Theoretical Biology

Year:

2020

File:

PDF, 2.20 MB

2020

3

Data-driven classification of residential energy consumption patterns by means of functional connectivity networks

Markovič, Rene, Gosak, Marko, Grubelnik, Vladimir, Marhl, Marko, Virtič, Peter

Journal:

Year:

2019

Language:

english

File:

PDF, 6.87 MB

english, 2019

4

Correlation of liquid chromatographic and biological assay for potency assessment of filgrastim and related impurities

Ana Skrlin, Ela Kosor Krnic, Darko Gosak, Berislav Prester, Vladimir Mrsa, Marko Vuletic, Domagoj Runac

Journal:

Journal of Pharmaceutical and Biomedical Analysis

Year:

2010

Language:

english

File:

PDF, 238 KB

english, 2010

5

[ACM Press the First ACM International Conference - Niagara Falls, New York (2010.08.02-2010.08.04)] Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10 - Pulmonary artery smooth muscle responses to KCl under normoxic and hypoxic conditions studied by means of a spatial network model

Gosak, Marko, Marhl, Marko, Guibert, Christelle, Billaud, Marie, Roux, Etienne

Year:

2010

Language:

english

File:

PDF, 342 KB

english, 2010

6

Applying network theory to fables: complexity in Slovene belles-lettres for different age groups

Markovič, Rene, Gosak, Marko, Perc, Matjaž, Marhl, Marko, Grubelnik, Vladimir

Journal:

Journal of Complex Networks

Year:

2018

Language:

english

File:

PDF, 1.02 MB

english, 2018

7

Pacemaker-driven stochastic resonance on diffusive and complex networks of bistable oscillators

Perc, Matjaž, Gosak, Marko

Journal:

New Journal of Physics

Year:

2008

Language:

english

File:

PDF, 2.15 MB

english, 2008

8

Periodic calcium waves in coupled cells induced by internal noise

Matjaž Perc, Marko Gosak, Marko Marhl

Journal:

Chemical Physics Letters

Year:

2007

Language:

english

File:

PDF, 399 KB

english, 2007

9

Mixing protocols in the public goods game

Duh, Maja, Gosak, Marko, Perc, MatjaÅ¾

Journal:

Physical Review E

Year:

2020

File:

PDF, 386 KB

2020

10

Importance of cell variability for calcium signaling in rat airway myocytes

Marko Marhl, Marko Gosak, Matjaž Perc, Etienne Roux

Journal:

Biophysical Chemistry

Year:

2010

Language:

english

File:

PDF, 499 KB

english, 2010

11

Membrane Potential and Calcium Dynamics in Beta Cells from Mouse Pancreas Tissue Slices: Theory, Experimentation, and Analysis

Dolenšek, Jurij, Špelič, Denis, Klemen, Maša, Žalik, Borut, Gosak, Marko, Rupnik, Marjan, Stožer, Andraž

Journal:

Year:

2015

Language:

english

File:

PDF, 4.17 MB

english, 2015

12

Spatiotemporal patterns provoked by environmental variability in a predator–prey model

Fras, Maja, Gosak, Marko

Journal:

Year:

2013

Language:

english

File:

PDF, 1.52 MB

english, 2013

13

Proper spatial heterogeneities expand the regime of scale-free behavior in a lattice of excitable elements

Marhl, Urban, Gosak, Marko

Journal:

Physical Review E

Year:

2019

File:

PDF, 3.97 MB

2019

14

Optimal network configuration for maximal coherence resonance in excitable systems

Gosak, Marko, Korošak, Dean, Marhl, Marko

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 475 KB

english, 2010

15

AIP Conference Proceedings [AIP LET'S FACE CHAOS THROUGH NONLINEAR DYNAMICS: 8th International Summer School/Conference - Maribor, Slovenia (26 June–10 July 2011)] - Correlations between beta-cells' calcium dynamics reveal differences in functional connectivity patterns in islets of Langerhans from pancreas tissue slices under low and high levels of glucose

Stožer, Andraž, Gosak, Marko, Korošak, Dean, Yakubo, Kousuke, Dolenšek, Jure, Marhl, Marko, Rupnik, Marjan Slak

Year:

2012

Language:

english

File:

PDF, 636 KB

english, 2012

16

Loosening the shackles of scientific disciplines with network science

Gosak, Marko, Markovič, Rene, Dolenšek, Jurij, Rupnik, Marjan Slak, Marhl, Marko, Stožer, Andraž, Perc, Matjaž

Journal:

Physics of Life Reviews

Year:

2018

Language:

english

File:

PDF, 371 KB

english, 2018

17

Mitochondrial Dysfunction in Pancreatic Alpha and Beta Cells Associated with Type 2 Diabetes Mellitus

Grubelnik, Vladimir, Zmazek, Jan, MarkoviÄ, Rene, Gosak, Marko, Marhl, Marko

Journal:

Year:

2020

File:

PDF, 1.54 MB

2020

18

Functional Connectivity in Islets of Langerhans from Mouse Pancreas Tissue Slices

Stožer, Andraž, Gosak, Marko, Dolenšek, Jurij, Perc, Matjaž, Marhl, Marko, Rupnik, Marjan Slak, Korošak, Dean, Shvartsman, Stanislav

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 869 KB

english, 2013

19

Pacemaker-guided noise-induced spatial periodicity in excitable media

Marko Gosak, Marko Marhl, Matjaž Perc

Journal:

Physica D: Nonlinear Phenomena

Year:

2009

Language:

english

File:

PDF, 2.23 MB

english, 2009

20

The brain as a complex network: assessment of EEG-based functional connectivity patterns in patients with childhood absence epilepsy

Leitgeb, Eva ParadiÅ¾, Å terk, Marko, Petrijan, Timotej, GradiÅ¡nik, Peter, Gosak, Marko

Journal:

Epileptic Disorders

Year:

2020

File:

PDF, 4.27 MB

2020

21

Broad-scale small-world network topology induces optimal synchronization of flexible oscillators

Markovič, Rene, Gosak, Marko, Marhl, Marko

Journal:

Chaos, Solitons & Fractals

Year:

2014

Language:

english

File:

PDF, 826 KB

english, 2014

22

Prevalence of stochasticity in experimentally observed responses of pancreatic acinar cells to acetylcholine

Perc, Matjaž, Rupnik, Marjan, Gosak, Marko, Marhl, Marko

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2009

Language:

english

File:

PDF, 635 KB

english, 2009

23

The Impact of Static Disorder on Vibrational Resonance in a Ferroelectric Liquid Crystal

Gosak, Marko, Perc, Matjaž, Kralj, Samo

Journal:

Molecular Crystals and Liquid Crystals

Year:

2012

Language:

english

File:

PDF, 413 KB

english, 2012

24

Assortativity provides a narrow margin for enhanced cooperation on multilayer networks

Duh, Maja, Gosak, Marko, Slavinec, Mitja, Perc, Matjaž

Journal:

New Journal of Physics

Year:

2019

File:

PDF, 1.50 MB

2019

25

Modelling of dysregulated glucagon secretion in type 2 diabetes by considering mitochondrial alterations in pancreatic Î±-cells

Grubelnik, Vladimir, MarkoviÄ, Rene, LipovÅ¡ek, SaÅ¡ka, Leitinger, Gerd, Gosak, Marko, DolenÅ¡ek, Jurij, Valladolid-Acebes, Ismael, Berggren, Per-Olof, StoÅ¾er, AndraÅ¾, Perc, MatjaÅ¾, Marhl, Marko

Journal:

Royal Society Open Science

Year:

2020

File:

PDF, 1.51 MB

2020

26

CHAOS BETWEEN STOCHASTICITY AND PERIODICITY IN THE PRISONER'S DILEMMA GAME

GOSAK, MARKO, MARHL, MARKO, PERC, MATJAŽ

Journal:

International Journal of Bifurcation and Chaos

Year:

2008

Language:

english

File:

PDF, 212 KB

english, 2008

27

Stochastic simulation of the circadian rhythmicity in the SCN neuronal network

Šimonka, Vito, Fras, Maja, Gosak, Marko

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

28

Critical and Supercritical Spatiotemporal Calcium Dynamics in Beta Cells

Gosak, Marko, Stožer, Andraž, Markovič, Rene, Dolenšek, Jurij, Perc, Matjaž, Rupnik, Marjan S., Marhl, Marko

Journal:

Frontiers in Physiology

Year:

2017

Language:

english

File:

PDF, 3.43 MB

english, 2017

29

The influence of gap junction network complexity on pulmonary artery smooth muscle reactivity in normoxic and chronically hypoxic conditions

Gosak, Marko, Guibert, Christelle, Billaud, Marie, Roux, Etienne, Marhl, Marko

Journal:

Experimental Physiology

Year:

2014

Language:

english

File:

PDF, 698 KB

english, 2014

30

Progressive glucose stimulation of islet beta cells reveals a transition from segregated to integrated modular functional connectivity patterns

Markovič, Rene, Stožer, Andraž, Gosak, Marko, Dolenšek, Jurij, Marhl, Marko, Rupnik, Marjan Slak

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 957 KB

english, 2015

31

Spatial coherence resonance in excitable biochemical media induced by internal noise

Marko Gosak, Marko Marhl, Matjaž Perc

Journal:

Biophysical Chemistry

Year:

2007

Language:

english

File:

PDF, 413 KB

english, 2007

32

From stochasticity to determinism in the collective dynamics of diffusively coupled cells

Matjaž Perc, Marko Gosak, Marko Marhl

Journal:

Chemical Physics Letters

Year:

2006

Language:

english

File:

PDF, 201 KB

english, 2006

33

The relationship between node degree and dissipation rate in networks of diffusively coupled oscillators and its significance for pancreatic beta cells

Gosak, Marko, Stožer, Andraž, Markovič, Rene, Dolenšek, Jurij, Marhl, Marko, Slak Rupnik, Marjan, Perc, Matjaž

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2015

Language:

english

File:

PDF, 1.09 MB

english, 2015

34

Proximity to periodic windows in bifurcation diagrams as a gateway to coherence resonance in chaotic systems

Gosak, Marko, Perc, Matjaž

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 218 KB

english, 2007

35

Mechanical Cell-to-Cell Interactions as a Regulator of Topological Defects in Planar Cell Polarity Patterns in Epithelial Tissues

MarkoviÄ, Rene, Marhl, Marko, Gosak, Marko

Journal:

Frontiers in Materials

Year:

2020

File:

PDF, 4.22 MB

2020

36

Spatio-temporal modelling explains the effect of reduced plasma membrane Ca2+ efflux on intracellular Ca2+ oscillations in hepatocytes

Marko Marhl, Marko Gosak, Matjaž Perc, C. Jane Dixon, Anne K. Green

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 342 KB

english, 2008

37

Stochastic resonance in soft matter systems: combined effects of static and dynamic disorder

Perc, Matjaž, Gosak, Marko, Kralj, Samo

Journal:

Year:

2008

Language:

english

File:

PDF, 890 KB

english, 2008

38

Modeling the Seasonal Adaptation of Circadian Clocks by Changes in the Network Structure of the Suprachiasmatic Nucleus

Bodenstein, Christian, Gosak, Marko, Schuster, Stefan, Marhl, Marko, Perc, Matjaž, Gutkin, Boris S.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1006 KB

english, 2012

39

Multilayer network representation of membrane potential and cytosolic calcium concentration dynamics in beta cells

Gosak, Marko, Dolenšek, Jurij, Markovič, Rene, Slak Rupnik, Marjan, Marhl, Marko, Stožer, Andraž

Journal:

Chaos, Solitons & Fractals

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

40

Cellular diversity promotes intercellular Ca2+ wave propagation

Journal:

Biophysical Chemistry

Year:

2009

Language:

english

File:

PDF, 578 KB

english, 2009

41

The role of neural architecture and the speed of signal propagation in the process of synchronization of bursting neurons

Marko Gosak, Rene Markovič, Marko Marhl

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2012

Language:

english

File:

PDF, 1008 KB

english, 2012

42

SNAP-25b-deficiency increases insulin secretion and changes spatiotemporal profile of Ca2+oscillations in β cell networks

Daraio, Teresa, Bombek, Lidija Križančić, Gosak, Marko, Valladolid-Acebes, Ismael, Klemen, Maša Skelin, Refai, Essam, Berggren, Per-Olof, Brismar, Kerstin, Rupnik, Marjan Slak, Bark, Christina

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.80 MB

english, 2017

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